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Cell Genomics

Cell Genomics is a Cell Press gold open access journal that publishes cutting-edge, multi-disciplinary research at the intersection of genomics and the life sciences.

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Subject Genetics & Heredity
Impact Factor 9
Quartile Q1
Open Access Type Open
ISSN 2666-979X
eISSN 2666-979X
Invitation Only No
Cost Range Article publishing charge: $8,900.

Submission Instructions

Cell Genomics accepts the following article types. Click on an article type to view submission instructions.

Article

Cover Letter A cover letter is required. The cover letter should explain the prior background, the conceptual advance, the significance and potential impact of the work, and note if the paper is part of a consortium.
Abstract A single-paragraph summary or abstract is required. The summary must be no more than 150 words. The abstract must be unstructured as a single paragraph.
Manuscript The manuscript should be under 8,000 words, excluding the reference list, STAR Methods, and supplemental information. The manuscript requires a resource availability section, must use STAR Methods format for acceptance, and may combine discussion with results as a "results and discussion" section. Up to 10 keywords may be included after the summary, an author contributions section and a declaration of interests section are required, a declaration of generative AI and AI-assisted technologies in the writing process is required only if applicable, and a supplemental information heading listing supplemental files is required when supplemental material is included.
References References must use numbered superscript citations in sequential order of first appearance. Each reference must contain only one article, "et al." should be used only after 10 author names, and only published, in-press, or identified preprint material may appear in the reference list.
Figures & Tables Articles may contain up to 7 display items. For accepted articles, figures or schemes must be uploaded as separate files, while main-text tables must appear at the end of the manuscript after the figure or scheme legends. Figure titles and legends must be provided together in a single figures section in the manuscript, and tables must be numbered consecutively and include a title.
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Resource

Cover Letter A cover letter is required. The cover letter should explain the prior background, the conceptual advance, the significance and potential impact of the work, and note if the paper is part of a consortium.
Abstract A summary or abstract is required. The summary must be a single paragraph of no more than 150 words. The summary must be unstructured as a single paragraph.
Manuscript Resources should be under 7,000 words, excluding the reference list, STAR Methods, and supplemental information. The manuscript must include a resource availability section, use STAR Methods for acceptance, and may combine the discussion with the results as a 'results and discussion' section. Up to 10 keywords may be included after the summary, author contributions and declaration of interests sections are required, a declaration of generative AI and AI-assisted technologies in the writing process is required only if applicable, and a supplemental information list must appear under a 'supplemental information' heading if supplemental files are included.
References References must use numbered superscript citations in sequential order. References must be numbered by first appearance, each entry must contain only one article, and 'et al.' should be used only after 10 author names.
Figures & Tables Resources may contain up to 7 display items. For accepted articles, figures or schemes must be uploaded as separate files while main-text tables should appear at the end of the manuscript after the figure or scheme legends. Figure titles and legends must be provided together in a 'figures' section of the manuscript, and tables must be numbered consecutively and include a title.
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Review

Cover Letter Cover letter should explain the prior background, the conceptual advance, the significance and potential impact of the work, and whether the paper is part of a consortium.
Abstract An abstract is required. Review abstract must be no more than 150 words. Abstract must be a single-paragraph unstructured summary.
Manuscript Reviews are usually 5,000 to 8,000 words in length. Reviews should be authoritative, balanced, and scholarly surveys of recent developments in the field. Up to 10 keywords may be included after the summary, an author contributions section and a declaration of interests section are required, and any use of generative AI in writing must be disclosed in a dedicated declaration section.
References Reviews may include up to 100 references. References must be numbered sequentially by first citation and cited in the text as numbered superscripts, with "et al." used only after 10 author names.
Figures & Tables Reviews may include 3 to 5 display items. For accepted articles, figures or schemes must be uploaded as separate files, and main-text tables must appear at the end of the manuscript after the figure or scheme legends. Figure titles and legends must be provided in a single figures section within the manuscript, and tables must be numbered and include a title.
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Short Article

Cover Letter A cover letter is required. Cover letter should explain the prior background, the conceptual advance, the significance and potential impact of the work, and note any consortium involvement.
Abstract A single-paragraph summary or abstract is required. The summary must not exceed 150 words. The abstract must be unstructured as a single paragraph.
Manuscript Short Articles must not exceed 4,000 words including title, author names and affiliations, summary, spaces, and figure legends, but excluding STAR Methods text, supplemental item legends, and the references section. The manuscript must include a resource availability section and use STAR Methods format for acceptance, and the discussion may be combined with the results as a results and discussion section. Up to 10 keywords may be included after the summary, an author contributions section and a declaration of interests section are required, and any use of generative AI in the writing process must be disclosed in a dedicated declaration section.
References References must use a numbered superscript citation style. References must be numbered sequentially by first citation, each entry must contain only one article, and "et al." may be used only after 10 author names.
Figures & Tables Short Articles may contain up to 4 display items. For accepted articles, figures or schemes must be uploaded as separate files, while main-text tables must appear at the end of the manuscript after the figure or scheme legends. Tables must be numbered consecutively, include a title, and not be subdivided into panels.
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Minireview

Cover Letter A cover letter is required. Cover letter should explain the prior background, the conceptual advance, the significance and potential impact of the work, and note if the paper is part of a consortium.
Abstract A summary or abstract is required. The summary must be a single paragraph of no more than 150 words. The summary must be unstructured and presented as a single paragraph.
Manuscript Minireviews should be no more than 3,500 words including references and figure legends. Up to 10 keywords may be included after the summary, and the manuscript must include an author contributions section plus a declaration of interests section, with an additional AI-writing declaration section only if such tools were used.
References Minireviews may include up to 35 references. References must be numbered sequentially by first citation and cited in the text using numbered superscripts, with "et al." used only after 10 author names.
Figures & Tables Minireviews may include one or two display items. Main-text tables should appear at the end of the manuscript, while main-text figures or schemes are uploaded separately only after acceptance.
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Letter

Cover Letter A cover letter is required. The cover letter should explain the prior background, the conceptual advance, the significance and potential impact of the work, and note consortium involvement if applicable.
Abstract A summary or abstract is required. The summary must be a single paragraph of no more than 150 words. The summary must be unstructured as a single paragraph.
Manuscript Letters must be no more than 1,500 words. The manuscript must include a resource availability section and use STAR Methods format for acceptance, and the discussion may be combined with the results as a results and discussion section if appropriate. An author contributions section and a declaration of interests section are required, a declaration of generative AI and AI-assisted technologies in the writing process is required only if such tools were used, up to 10 keywords may be included after the summary, and an acknowledgment section is strongly encouraged.
References Letters are strictly limited to 10 references. References must be numbered sequentially by first citation and cited in the text using numbered superscripts, each reference must contain only one article, and et al. should be used only after 10 author names.
Figures & Tables Letters may contain data presented as a single supplemental figure online. For accepted articles, main-text figures or schemes must be uploaded as separate files rather than embedded in the manuscript, and main-text tables should appear at the end of the manuscript after the figure or scheme legends. Figure titles and legends must be provided in a single figures section within the manuscript, and tables must be numbered and include a title.
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Recent Publications

RandomReadsMG: Rapid, realistic metagenome simulation at terabase scale for benchmarking and experimental design

Brian Bushnell, Frederik Schulz, Juan C. Villada

10.1016/j.xgen.2026.101384
View Publication

Disease-associated loci share properties with response eQTLs under common environmental exposures

Wenhe Lin, Mingyuan Li, Olivia Allen, Jonathan Burnett, Joshua M. Popp, Matthew Stephens, Alexis Battle, Yoav Gilad

10.1016/j.xgen.2026.101383
View Publication

Single-cell multiomics across nine mammals reveals cell-type-specific regulatory conservation in the brain

Ashlyn G. Anderson, Brianne B. Rogers, Erin A. Barinaga, Jacob M. Loupe, Elisa WaMaina, S. Quinn Johnston, Henry L. Limbo, Elizabeth A. Gardner, Anna J. Moyer, Amanda L. Gross, Douglas R. Martin, Summer B. Thyme, Lindsay F. Rizzardi, Richard M. Myers, Gregory M. Cooper, J. Nicholas Cochran

10.1016/j.xgen.2026.101367
View Publication

MOSHPIT: Accessible, reproducible metagenome data science on the QIIME 2 framework

Michal Ziemski, Liz Gehret, Anthony Simard, Santiago Castro Dau, Vinzent Risch, Doriela Grabocka, Christos Matzoros, Colin Wood, Paula Momo Cabrera, Rodrigo Hernández-Velázquez, Milo R. Schärer, Felicia Sandberg, Chloe Herman, Keegan Evans, Michael S. Robeson, Evan Bolyen, J. Gregory Caporaso, Nicholas A. Bokulich

10.1016/j.xgen.2026.101366
View Publication

Intraspecific sequence variation and complete genomes refine the identification of rapidly evolved regions in humans

Yanting Luo, Riley J. Mangan, Seth Weaver, Sarah A. Zhao, Federica Mosti, Michael C. Thomas, Ravi Karra, Debra L. Silver, Manolis Kellis, Craig B. Lowe

10.1016/j.xgen.2026.101363
View Publication

Frequently asked questions

How long does it take to publish?

Median time to first editorial decision is 5 days. Median acceptance to online publication is 28 days.

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Is a cover letter required?

A cover letter is requested for initial submission. It should explain the background, conceptual advance, significance and potential impact of the work, and note whether the paper is part of a consortium. It may also suggest reviewers, request reviewer exclusions, share information about related work, time constraints, or competition, and note prior communication with editors.

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What are the publication costs?

Article publishing charge: $8,900.

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Research Topics

Single-cell and spatial transcriptomics Genetic Associations and Epidemiology Cancer Genomics and Diagnostics Genomics and Chromatin Dynamics CRISPR and Genetic Engineering RNA Research and Splicing Epigenetics and DNA Methylation RNA modifications and cancer Genomics and Rare Diseases RNA and protein synthesis mechanisms Bioinformatics and Genomic Networks Genetic Mapping and Diversity in Plants and Animals Chromosomal and Genetic Variations Genomics and Phylogenetic Studies Cancer-related molecular mechanisms research Genomic variations and chromosomal abnormalities Gene expression and cancer classification Cell Image Analysis Techniques Genetic and phenotypic traits in livestock T-cell and B-cell Immunology Genetics and Neurodevelopmental Disorders Gene Regulatory Network Analysis Molecular Biology Techniques and Applications Ethics in Clinical Research Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities

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